PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Itr_sc000625.1_g00006.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
Family ERF
Protein Properties Length: 241aa    MW: 26537.1 Da    PI: 8.4769
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Itr_sc000625.1_g00006.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP262.59.2e-2087137255
                      AP2   2 gykGVrwdkkrgrWvAeIrdpseng.krkrfslgkfgtaeeAakaaiaarkkleg 55 
                              +y+GVr+++ +g+++AeIrdp   + k +r++lg+f+ta +Aaka+++a+ kl+g
  Itr_sc000625.1_g00006.1  87 HYRGVRQRP-WGKFAAEIRDP---NrKGTRVWLGTFDTAVDAAKAYDRAAFKLRG 137
                              7********.**********9...6566*************************98 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.730.106.0E-3386146IPR001471AP2/ERF domain
SuperFamilySSF541712.88E-2387147IPR016177DNA-binding domain
SMARTSM003802.8E-3987151IPR001471AP2/ERF domain
PfamPF008478.8E-1487137IPR001471AP2/ERF domain
PROSITE profilePS5103224.11887145IPR001471AP2/ERF domain
CDDcd000186.33E-3187145No hitNo description
PRINTSPR003678.8E-148899IPR001471AP2/ERF domain
PRINTSPR003678.8E-14127147IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010200Biological Processresponse to chitin
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 241 aa     Download sequence    Send to blast
MALSEESCAL DLIRHHLLDD SAFNQVYCNS EQNCFGFVAS SPSSKFNERK PSLNIAIPRP  60
AVNNKGSGQI PAPAPEVQDS GEVVKRHYRG VRQRPWGKFA AEIRDPNRKG TRVWLGTFDT  120
AVDAAKAYDR AAFKLRGSKA ILNFPLEVEN FRPASQPAPA PTCGQKRPRE AEEEVAVIKQ  180
VKREVVEESS PPPPPPQAAA APLTPSSWTT VWDCSEVKGI FEIPPLSPLP LSPYNYHGIR  240
V
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A2e-3186150468ATERF1
3gcc_A2e-3186150468ATERF1
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00556DAPTransfer from AT5G51190Download
Motif logo
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006358219.18e-74PREDICTED: ethylene-responsive transcription factor 5-like
SwissprotQ404782e-66ERF5_TOBAC; Ethylene-responsive transcription factor 5
TrEMBLE3VVS13e-75E3VVS1_PETHY; Ethylene-responsive-element-binding factor 12
STRINGPGSC0003DMT4000279373e-73(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA9632389
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G51190.12e-37ERF family protein